🖥 Software¶
Open-Source Projects¶
Below is a list of software projects created at NeuroPoly or at collaborative institutions. These projects are open source and freely available.
MRI¶
Name |
Description |
Links |
|---|---|---|
ivadomed |
Comprehensive and open-source repository of deep learning methods for medical data segmentation |
|
Multiclass Segmentation |
Code related to the NIH marmoset longitudinal segmentation project |
|
qMRLab |
Software for data aimulation, analysis, and visualization of qMRI data (Magnetization Transfer, Diffusion, etc.) |
|
Shimming Toolbox |
Code for performing real-time shimming using external MRI shim coils |
|
Spinal Cord Toolbox |
Comprehensive and open-source library of analysis tools for multi-parametric MRI of the spinal cord |
|
Template |
A framework for creating unbiased MRI templates of the spinal cord |
Histology¶
Name |
Description |
Links |
|---|---|---|
Atlas Rat |
Scripts to generate a microstructure atlas of the rat spinal cord |
|
AxonSeg |
Automatic segmentation of axon and myelin from microscopy data |
|
AxonDeepSeg |
Segmentation software for microscopy data using deep learning |
|
AxonPacking |
Simulation software for arrangements of axons in white matter |
|
Tract Clustering |
Data-driven approach for tracts in rat histology |
Contributing¶
NeuroPoly welcomes and appreciates contributions. To get started, please check out NeuroPoly’s contributing guidelines: NeuroPoly Lab: Software Contributing Guidelines.